2021 |
Y. Luo, V. Kurian, and B.A. Ogunnaike. "Bioprocess systems analysis, modeling, estimation, and control". Current Opinion in Chemical Engineering, 33:100705, 2021 |
2020 |
Y. Luo, R.J. Lovelett, J.V. Price, D. Radhakrishnan, K. Barnthouse, P. Hu, E. Schaefer, J. Cunningham, K.H. Lee, R.B. Shivappa, and B.A. Ogunnaike. "Modeling the Effect of Amino Acids and Copper on Monoclonal Antibody Productivity and Glycosylation: A Modular Approach". Biotechnology Journal, 2000261, 2020 |
E. Wells, L. Song, M. Greer, Y. Luo, V. Kurian, B.A. Ogunnaike, and A.S. Robinson. "Media supplementation for targeted manipulation of monoclonal antibody galactosylation and fucosylation". Biotechnology and Bioengineering, 117(11), 3310-3321, 2020 |
J.H. Park, J. Gorky, B.A. Ogunnaike, R. Vadigepalli, and J.S. Schwaber. "Investigating the Effects of Brainstem Neuronal Adaptation on Cardiovascular Homeostasis". Frontiers in Neuroscience, 14, 470, 2020 |
M.M. Staehle, S. O’Sullivan, R. Vadigepalli, K.F. Kernan, G.E. Gonye, B.A. Ogunnaike, and J.S. Schwaber. "Diurnal patterns of gene expression in the dorsal vagal complex and the central nucleus of the amygdala–non-rhythm-generating brain regions". Frontiers in Neuroscience, 14, 375, 2020 |
A.J. Harding, A.G. Kuba, B.E. McCandless, U.K. Das, K.D. Dobson, B.A. Ogunnaike, and W.N. Shafarman. "The growth of methylammonium lead iodide perovskites by close space vapor transport". RSC Advances, 10(27), 16125-16131, 2020 |
2019 |
B.A. Ogunnaike. "110th Anniversary: Process and Systems Engineering Perspectives on Personalized Medicine and the Design of Effective Treatment of Diseases". Industrial & Engineering Chemistry Research, 58(44), 20357-20369, 2019 |
G. McIlvain, E. Ganji, C. Cooper, M.L. Killian, B.A. Ogunnaike, and C.L. Johnson. "Reliable preparation of agarose phantoms for use in quantitative magnetic resonance elastography". Journal of the Mechanical Behavior of Biomedical Materials, 97, 65-73, 2019 |
2011–2018 |
2010 |
G. Miller, B.A. Ogunnaike, J. S. Schwaber, and R. Vadigepalli, "Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network", BMC Systems Biology, 4:171, 2010. |
S.-W. Chung, C.R. Cooper, M. C. Farach-Carson, and B. A. Ogunnaike, "A Control Engineering Model for Resolving the TGF-β Paradox in Cancer," Adv. in Theory of Control, Signals 407, 255-268, 2010. |
S.C. Garge, M.D. Wetzel, and B.A. Ogunnaike, "Inference-Based Scheme for Controlling Product End-Use Properties in Reactive Extrusion Processes," Ind. Eng. Chem. Res., 49, 8021-8034, 2010. |
B.A. Ogunnaike, C. A. Gelmi, J. S. Edwards, "A probabilistic framework for microarray data analysis: Fundamental probability models and statistical inference," J. of Theor. Biol., 264, 211-222, 2010. |
T. Nakakuki, M.R. Birtwistle, Y. Saeki, N. Yumoto, K. Ide, T. Nagashima, L. Brusch, B.A. Ogunnaike, M. Okada-Hatakeyama, and B.N. Kholodenko, "Ligand-Specific c-Fos Expression Emerges from the Spatiotemporal Control of ErbB Network Dynamics," Cell, 141, 884-896, 2010. |
2009 |
E.S. Welf, B.A. Ogunnaike, and U.P. Naik, "Quantitative statistical description of integrin clusters in adherent cells," IET Syst. Biol., 3, (5), 307-316, 2009. |
M. R. Birtwistle, B. Kholodenko, and B. A. Ogunnaike, "Experimental Design for Parameter Identifiability in Biological Signal Transduction Modeling"; Chapter 10 in Methods in Bioengineering, Ed. A Jayaraman and J Hahn, Artech House, 2009. |
A. M. Shough, D. J. Doren, and B. A. Ogunnaike, " Transition Metal Substitution in ETS-10: DFT Calculations and a Simple Model for Electronic Structure Prediction," Chem. Mater., 21, 1232-1241, 2009. |
K. Mukati, B. A. Ogunnaike, E. Eser, S. Fields, R W. Birkmire, "Scale-up of Cu(InGa)Se2 Thin Film Co-evaporative Physical Vapor Deposition Process. 2: Evaporation Source Design," Ind. Eng. Chem. Res., 48 (13), 5992-5999, 2009. |
K. Mukati, B. A. Ogunnaike, E. Eser, S. Fields, R W. Birkmire, "Scale-up of Cu(InGa)Se2 Thin Film Co-evaporative Physical Vapor Deposition Process. 1: Evaporation Source Model Development," Ind. Eng. Chem. Res., 48 (13), 5975-5991, 2009. |
S.-W. Chung, F.L. Miles, R.A. Sikes, C.R. Cooper, M. C. Farach-Carson, and B. A. Ogunnaike, "Quantitative Modeling and Analysis of the Transforming Growth Factor Signaling Pathway," Biophys. Journal 96, 1733-1750, 2009. |
K. Mukati, M. Rasch and B. A. Ogunnaike, "An Alternative Structure for next generation Regulatory Controllers: Part II Stability analysis and tuning rules and experimental Validation," J. Process Control, 19 (2), 272-287, 2009. doi:10.1016/j.jprocont.2008.03.004. |
2008 |
A-J Su, C-C Yu, and B. A. Ogunnaike, "On the interaction between measurement strategy and control performance in semiconductor manufacturing," J. Process Control, 18 (3), 266-276, 2008. |
2007 |
J. G. VanAntwerp, A. P. Featherstone, R. D. Braatz, and B. A. Ogunnaike, "Cross-directional control of sheet and film processes," Automatica, 43, 191-211, 2007. |
M. R. Birtwistle, M. Hatakeyama, N. Yumoto, B. A. Ogunnaike, J. B. Hoek, and B. N. Kholodenko, "Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses," Molecular Systems Biology 3:144,1-16, 2007. |
A. V. Tendulkar, B. A. Ogunnaike, and P. P. Wangikar, "Protein local conformations arise from a mixture of Gaussian distributions," J Biosciences, 32(5), 899-908, 2007. |
A. Malcolm, J. Polan, B. A. Ogunnaike and A. Linninger, "Integrating Systems Design and Control using Dynamic Flexibility Analysis", AIChE J, 53, (8), 2048-2061, 2007. |
S.C. Garge, M.D. Wetzel, and B.A. Ogunnaike, "Quantification of the Melting Process in a Co-rotating Twin-Screw Extruder: A Hybrid Modeling Approach," Polymer Eng. Sci., 47, (7), 1040-1051, 2007. |
A. Samant, B. A. Ogunnaike and D. G. Vlachos, "A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks", BMC Bioinformatics, 8:175, 2007. |
2006 |
T.F. Edgar, B.A. Ogunnaike, and K.R. Muske, "A global view of graduate process control education;" Comp. and Ch. E, 30 (10), p.1763-1774, 2006. |
T. F. Edgar, B. A. Ogunnaike, J. J. Down, K. R. Muske, B. W. Bequette, "Renovating the undergraduate process control course"; Comp. and Ch. E. 30 (10), p.1749-1762, 2006. |
D.E. Zak, H. Hao, R. Vadigepalli, G. Miller, B.A. Ogunnaike and J. S. Schwaber, "Systems Analysis of circadian context-dependent neuronal epidermal growth factor receptor signaling", Genome Biology, 7:R48, 2006.(doi:10.1186/gb-2006-7-6-r48). |
N. Yalamanchili, D. E. Zak, B. A. Ogunnaike, J. S. Schwaber, A. Kriete, and B. N. Kholodenko, "Quantifying gene network connectivity in silico: Scalability and accuracy of a modular approach" IEE Proceedings Systems Biology 153, 236-246, 2006. |
H. Hao, Zak D. E., Sauter T, Schwaber J, and B. A. Ogunnaike, "Modeling the VPAC2-Activated cAMP/PKA Signalling Pathways: From Receptor to Circadian Clock Gene Induction", Biophys J., 90, 1560-1571, 2006. |
B. A. Ogunnaike, and K. Mukati, "Design, development and implementation of an alternative structure for next generation regulatory controllers", J. of Process Control, 16, 499-509, 2006. |
B. A. Ogunnaike, "Elucidating the digital control mechanism for DNA damage repair with the p53-Mdm2 System: Single cell data analysis and ensemble modeling", J. Roy. Soc. Interface, 3, 175-184, 2006. |
2005 |
K. J. Kauffman, B. A. Ogunnaike and J. S. Edwards, "Designing experiments that aid in the identification of regulatory networks" Br. Funct. Genomic and Proteomics, 4, (4) 331-342, 2006 Published on-line Dec 2005, doi:10.1093/bfgp/eli004. |
J. Merritt, J. A. Butz, B. A. Ogunnaike, and J. S. Edwards, "Parallel Analysis of Mutant Human Glucose 6-Phosphate Dehydrogenase in Yeast Using PCR Colonies", Biotech. and Bioeng., 92(5):519-531, 2005; Published on-line 22 August, 2005. doi: 10.1002/bit.20726. |
A. V. Tendulkar, M.A. Sohoni, B.A. Ogunnaike and P. P. Wangikar, "A geometric invariant-based framework for the analysis of protein conformational space", Bioinformatics, 21 (8), 3622-3628, 2005. |
M. Pottmann, B.A. Ogunnaike, and J.S. Schwaber, "Development and Implementation of a High performance Sensor System for an Industrial Polymer Reactor", Ind. Eng. Chem. Res., 44, 2606-2620, 2005. |
D.E. Zak, R. Vadigepalli, G E. Gonye, F.J. Doyle III, J.S. Schwaber, and B.A. Ogunnaike, "Unconventional systems analysis problems in molecular biology: A case study in gene regulatory network modeling," Comp. & Chem. Eng., 29, 547-563, 2005. |
2004 |
B. A. Ogunnaike, "Design of multivariable controllers by direct synthesis: Theory and experimental implementation," Special Issue of the J. Chin. Inst. Chem. Engrs., 35, 335-351, 2004. |
R. J. Hendershot, W. B. Rogers, C. M. Snively, B. A. Ogunnaike, J. Lauterbach, "Development of NOx Storage and Reduction Catalysts Using Statistically Guided High-throughput Experimentation," Catalysis Today, 98, 375-385, 2004. |
V. Mikkilineni, R.D. Mitra, J.R. DiTonno, J. Merritt, G.M. Church, B.A. Ogunnaike, and J.S. Edwards, "Digital quantitative measurements of gene expression," Biotech. and Bioeng., 86, 117-124, 2004. |
2003 |
N. Mehranbod, M. Soroush, M. Piovoso, and B.A. Ogunnaike, "Probabilistic model for sensor fault detection and identification," AIChE J., 49, 1787-1802, 2003. |
R.J. Brendel, B.A. Ogunnaike, and P.S. Dhurjati, "Nonlinear PI controllers based on low-order empirical process models," Ind. Eng. Chem. Res., 42, 4668-4677, 2003. |
N. Zambare, M. Soroush, and B.A. Ogunnaike, "A method of robust multi-rate state estimation," J. of Process Control, 13, 337-355, 2003. |
2002 |
H. Perez, B.A. Ogunnaike, and S. Devasia, "Output tracking between points for nonlinear processes: Van de Vusse example," IEEE Trans. on Control Systems Technology, 10, 611-617, 2002. |
2001 |
R.S. Parker, D. Heemstra, F.J. Doyle III, R.K. Pearson, and B.A. Ogunnaike, "The identification of nonlinear models for process control using tailored ‘plant-friendly’ input sequences," J. of Process Control, 11 (2), 237-250, 2001. |
B.W. Bequette and B.A. Ogunnaike, "Chemical process control education and practice," IEEE Control Systems Magazine, 10-17, April 2001. |
2000 |
M.P. Harold and B.A. Ogunnaike, "Perspective: Process control in the evolving chemical industry," AIChE J., 46, 2123-2127, 2000. |
G.-Y. Zhu, M.A. Henson, and B.A. Ogunnaike, "A hybrid model predictive control strategy for nonlinear plantwide control," J. of Process Control, 10, 449-458, 2000. |
A. Adetayo, B.A. Ogunnaike, and M. Pottmann, "Developing an effective control strategy for granulation processes," KONA Powder and Particle, 17, 183-189, 2000. |
M. Pottmann, B.A. Ogunnaike, A.A. Adetayo, and B.J. Ennis, "Model-based control of a granulation system," Powder Technology, 108, 192-201, 2000. |
S.A. Russell, D.G. Robertson, J.H. Lee, and B.A. Ogunnaike, "Model-based quality monitoring of batch and semi-batch processes," J. of Process Control, 10, 317-332, 2000. |
1999 |
A. Kordon, Y.O. Feuntes, B.A. Ogunnaike, and P.S. Dhurjati, "An intelligent parallel control system structure for plants with multiple operating regimes," J. of Process Control, 9, 453-460, 1999. |
S. Tatiraju, M. Soroush, and B.A. Ogunnaike, "Multirate nonlinear state estimation with application to a polymerization reactor," AIChE J., 45, 769-780, 1999. |
1998 |
Y. Chikkula, J.H. Lee, and B.A. Ogunnaike, "Dynamic scheduled model predictive control using hinging hyperplane models," AIChE J., 44, 2658-2674, 1998. |
S.A. Russell, D.G. Robertson, J.H. Lee, and B.A. Ogunnaike, "Quality monitoring and control of Nylon 6,6 autoclaves," Chem. Eng. Sci., 53, 3685-3702, 1998. |
S.A. Russell, P. Kesavan, J.H. Lee, and B.A. Ogunnaike, "Recursive data-based prediction and control of batch product quality," AIChE J., 44, 2442-2458, 1998. |
1997 |
Chien, I-Lung and B. A. Ogunnaike, "Modeling and Control of a Temperature-Based High-Purity Distillation Column", Chem. Eng. Comm., Vol. 158, 71-105 (1997) |
A. Banerjee, Y. Arkun, B.A. Ogunnaike, and R.K. Pearson, "Estimation of nonlinear systems using linear multiple models," AIChE J., 43, 1204-1226, 1997. |
F. Allgöwer and B.A. Ogunnaike, "Dual-mode adaptive control of nonlinear processes," Comp. & Chem. Eng., 21, S155-S160, 1997. |
1996 |
B.A. Ogunnaike, "A contemporary industrial perspective on process control theory and practice," Annual Reviews in Control, 20, 1-8, 1996. |
M. Pottmann, M.A. Henson, B.A. Ogunnaike, and J.S. Schwaber, "A parallel control strategy abstracted from the baroreceptor reflex," Chem. Eng. Sci., 52, 931-945, 1996. |
R.K. Pearson, B.A. Ogunnaike, and F.J. Doyle III, "Identification of structurally constrained second-order Volterra models," IEEE Trans. Sig. Proc., 44, 2837-2846, 1996. |
B.R. Maner, F.J. Doyle III, B.A. Ogunnaike, and R.K. Pearson, "Nonlinear model predictive control of a simulated polymerization reactor using second-order Volterra models," Automatica, 32, 1285-1301, 1996. |
1995 |
G.R. Sriniwas, Y. Arkun, I.-L. Chien, and B.A. Ogunnaike, "Nonlinear identification and control of a high-purity distillation column: A case study," J. of Process Control, 5, 149-162, 1995. |
B.A. Ogunnaike, "The role of CACSD in contemporary industrial process control," IEEE Trans. on Control Systems Technology, 2, 41-47, 1995. |
F.J. Doyle III, B.A. Ogunnaike, and R.K. Pearson, "Nonlinear model-based control using second-order Volterra series models," Automatica, 31, 669-714, 1995. |
M.A. Henson, B.A. Ogunnaike, and J.S. Schwaber, "Habituating control strategies for process control," AIChE J., 41, 604-618, 1995. |
M.A. Henson, B.A. Ogunnaike, J.S. Schwaber, and F.J. Doyle, "The baroreceptor reflex: A biological control system with applications in chemical process control," Ind. Eng. Chem. Res., 33, 2453-2466, 1994. |
1994 |
B.A. Ogunnaike, "On-line modeling and predictive control of an industrial terpolymerization reactor," Int. J. of Control, 59, 711-729, 1994. |
1986 |
B.A. Ogunnaike and K.E.P. Adewale, "Dynamic matrix control for processes with time varying parameters," Chem. Eng. Comm. 47, 295, 1986. |
B.A. Ogunnaike, "Controller design for nonlinear process systems via variable transformations," Ind. & Eng. Chem. Proc. Des. Dev., 25, 241, 1986. |
B.A. Ogunnaike, "Dynamic matrix control: A non-stochastic, industrial process control technique with parallels in applied statistics," Ind. & Eng. Chem. Fund., 25, 712, 1986. |
1985 |
B.A. Ogunnaike, "An optimal controller for discrete time delay systems requiring no prediction," Chem. Eng. Comm., 37, 249, 1985. |
1984 |
B.A. Ogunnaike and W.H. Ray, "Incomplete state feedback for time delay systems: Observer applications in multidelay compensation," AIChE J., 30, 717, 1984. |
1983 |
B.A. Ogunnaike, J.P. Lemaire, M. Morari, and W.H. Ray, "Advanced multivariable control of a pilot plant distillation column," AIChE J., 29, 632, 1983. |
1982 |
B.A. Ogunnaike and W.H. Ray, "Computer-aided multivariable control system design for processes with time delays," Comp. & Chem. Eng., 6, 311, 1982. |
1981 |
B.A. Ogunnaike, "A new approach to observer design for time delay systems," Int. J. of Control, 33, 519, 1981. |
1979 |
B.A. Ogunnaike and W.H. Ray, "Multivariable controller design for linear systems having multiple time delays," AIChE J., 25, 1043, 1979. |